Hi Daniel
Is the control you have been using a 3 button with 3 digit display? I am working on the basis it is.
As to why they are burning out that is difficult to say with out knowing a more about your set up. so can you answer a few questions for me
1) What calibration setting were you using?
2) What was the flow rate set to?
3) what size pump are you using?
4) Was any message displayed just prior to the control stopping?
5) What size water jets are you using?
6) Was the fuse fitted?
7) Was a pump pressure switch fitted?

How old is the control?
I know it seems like a lot of info however it may help me identify what is happening to the control.