Hopefully the job is now done and all is well!...the default specification for this work is to lift all the blocks, remove the adhesive residue from the subfloor assuming that it is sound, prime and dpm if necessary, apply a high quality elastic wood floor adhesive, dress blocks or replace and then re stick, sand, fill and coat. So not straight forward.
We had good success though by lifting whole sections of loose blocks, laying them out jigsaw like in the exact pre removal pattern. Then vacuuming out loose material from the hole. The adhesive residue on the back of each block usually corresponds with the hole in the sub floor from which it came....is this making any sense?
Anyway using bitumen based dipping adhesive, which sadly we don't make, each block can be put back into its original position, allowed to set in the adhesive bed, then finished.