i had exactly the same issue with mine recently untill i got to a poit yesterday where it just didnt want to work, checked connections changed controller etc and everytime i turned the flow on the batt voltage dropped from 12.6 to low 11's,got my multimeter out and checked batt voltage while flow was on and was mid 12's then stuck probes right onto the outside of the battery terminals and they was down to 11.5 and obviously losing abit down the cable as you do it was into the low 11's on the controller display, i refitted the wires onto the extra terminals on the leisure battery and doesnt drop below 12volts now, all down to some cheap crappy battery clamps!!
see what your battery voltage is on the actual battery to determine if its a fault in the line some where or the battery may be going down?